Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866668:139866747:[+] chr3:49695025:49695087:[+] nonBSJ supported CDS

circRNA 5':AUCUCCACGUCU---UCCA--GCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACU--ACCCAGUCUUCCAUCAACUGGC 3'


            ||||||| | || ||| ||||| |||| |||| || ||||


target  3': AGAGGUGGAACCCUAGCCACCGUC--GACAC---------------UACACCUACCGACCUCUCUGGGACCC------GUCGACCA 5'

 -22.90 15 RIC-seq
chrX:139866669:139866747:[+] chr3:49695025:49695086:[+] nonBSJ supported CDS

circRNA 5':UCUCCACGUCU---UCCA--GCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACU--ACCCAGUCUUCCAUCAACUGGC 3'


            |||||| | || ||| ||||| |||| |||| || ||||


target  3': GAGGUGGAACCCUAGCCACCGUC--GACAC---------------UACACCUACCGACCUCUCUGGGACCC------GUCGACCA 5'

 -20.80 1 RIC-seq
chrX:139866675:139866747:[+] chr3:49695025:49695088:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGCAUC---UCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACU--ACCCAGUCUUCCAUCAACUGGC 3'


            ||| |||| | || ||| |||| |||| |||| || ||||


target  3': UAG-AGGUGGAACCCUAGCCACC----GUCGACAC--UACACCUACCGACCUCUCUGGGACCC------GUCGACCA 5'

 -18.80 14 RIC-seq
chrX:139866684:139866747:[+] chr3:49695025:49695084:[+] nonBSJ supported CDS

circRNA 5':GCAUCUCUGUGUCUUC--CAGCAUCUUCAUGUCUUCCAACAACU--ACCCAGUCUUCCAUCAACUGGC 3'


            ||:|| | :|| |||| |||| |||| || ||||


target  3':GGUGGAACCCUAGCCACCGUCGACAC--UACACCUACCGACCUCUCUGGGACCC------GUCGACCA 5'

 -16.80 1 RIC-seq
chrX:139866728:139866757:[+] chr3:49695036:49695067:[+] nonBSJ supported CDS

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAU--AUCCA 3'


            |||: ||||| |:||


target  3':CGUCGACACUACACCUACCGACCUCUCUGGGA 5'

 -12.00 1 RIC-seq