Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866520:139866538:[+] chr3:56662530:56662547:[-] nonBSJ supported CDS

circRNA 5':CAACCAAGCCAUGUCUUCC 3'


            |||| || ||||||||


target  3':UUUGGA-CGUUACAGAAGU 5'

 -16.30 47 RIC-seq
chrX:139866530:139866538:[+] chr3:56662538:56662547:[-] nonBSJ supported CDS

circRNA 5': AUGUCUUCC 3'


            ||||||||


target  3':UUACAGAAGU 5'

 -9.50 2 RIC-seq
chrX:139866616:139866642:[+] chr3:56702539:56702564:[-] nonBSJ supported CDS

circRNA 5':CUCCAGGUCUUCCAGCAUCUCCAGGGC 3'


            ||||:: ||| :||:|: |||


target  3':AAGGUUU-GAAAAAUGUGGGUACCCCA 5'

 -18.20 18 RIC-seq