Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866297:139866341:[+] chr1:37979091:37979141:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCCUCAAAUCCAUAG------C-UUCCGAAAAAUCCAG-GUCUUCCA 3'


            | ||||||||||| ||||| | :|||:|| |||: || ||||


target  3':UC-GAAGGGAGUUUUCGUAUCUAGACAGCGAGGUUUAAACGGUUACA-AAGGA 5'

 -35.40 1 RIC-seq
chrX:139866297:139866359:[+] chr1:37979091:37979141:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUC-UUCCAGGAAAUCC-GUGUCUUCCA 3'


            | ||||||||||| ||||| ||| ||| :||||:: || :||| ||||


target  3':UC-GAAGGGAGUUUUCGUAUC----------UAGA--CAGCGAGGUUUAAACGGUUACA-AAGGA 5'

 -39.90 19 RIC-seq
chrX:139866301:139866359:[+] chr1:37979095:37979141:[-] nonBSJ supported CDS

circRNA 5':UUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUC-UUCCAGGAAAUCC-GUGUCUUCCA 3'


            ||||||||| ||||| ||| ||| :||||:: || :||| ||||


target  3': AGGGAGUUUUCGUAUC----------UAGA--CAGCGAGGUUUAAACGGUUACA-AAGGA 5'

 -35.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866297:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866297:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866301:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC