Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865334:139865398:[+] chr3:183508651:183508711:[+] nonBSJ supported CDS

circRNA 5': GUCCAGGGUUUCCGAUGGCA-CCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3'


            | | | ||| | ||||| ||| ||: |||| |:||| || || ||: || ||||


target  3':ACUGCUGCCACCCCC-ACCGUCGGA-ACG--UCCA-AGGGUGCCACCGGACC-GAGUGUGUGUGAAC 5'

 -36.10 10 RIC-seq
chrX:139865338:139865398:[+] chr3:183508651:183508702:[+] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGAUGGCA-CCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3'


            ||| | ||||| ||| ||: |||| |:||| || || ||: || ||||


target  3':ACCC-----CCACCGUCGGA-ACG--UCCA-AGGGUGCCACCGGACC-GAGUGUGUGUGAAC 5'

 -35.60 1 RIC-seq
chrX:139865339:139865398:[+] chr3:183508651:183508702:[+] nonBSJ supported CDS

circRNA 5': GGGUUUCCGAUGGCA-CCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUC 3'


            ||| | ||||| ||| ||: |||| |:||| || || ||: || ||||


target  3':ACCC-----CCACCGUCGGA-ACG--UCCA-AGGGUGCCACCGGACC-GAGUGUGUGUGAAC 5'

 -35.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:183508651:183508711:[+] target - chr3:183508704-183508705 C>T LICA-CN ICGC