Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865661:139865671:[+] chr3:63981348:63981359:[+] nonBSJ supported CDS

circRNA 5':CAGCUAAU-CCA 3'


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target  3':CUCGACCAUGGC 5'

 -5.60 1 RIC-seq
chrX:139865662:139865702:[+] chr3:63981348:63981379:[+] nonBSJ supported CDS

circRNA 5':AGCUAAUCCAUGUC-UUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            || ||| ||||| ||| || |||


target  3':ACGUAAAUC-ACACCAAGGUACUC---GAC-CA-----UGGC 5'

 -10.40 16 RIC-seq
chrX:139865667:139865702:[+] chr3:63981348:63981365:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            |||||| ||| || |||


target  3':AAGGUACUC------------GAC-CA-----UGGC 5'

 -9.70 2 RIC-seq