Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865810:139865840:[+] chr3:33543209:33543241:[-] nonBSJ supported CDS

circRNA 5': CAGAAAGAAAUC-CAGGUCUUCCAGUCAGU-CA 3'


            ||| |||| | ||:|: |||| || | |


target  3':GGUCCGUCUUCUGUGUUCGAAAGGCUUGUGACG 5'

 -18.20 1 RIC-seq
chrX:139865810:139865844:[+] chr3:33543209:33543242:[-] nonBSJ supported CDS

circRNA 5': CAGAAAGAAAUC-CAGGUCUUCCAGUCAGUCAGUGU 3'


            ||| |||| | ||:|: |||| | || ||:


target  3':GGUCCGUCUUCUGUGUUCGAAAGG-CUU---GUGACGA 5'

 -19.60 16 RIC-seq
chrX:139865820:139865844:[+] chr3:33543186:33543215:[-] nonBSJ supported CDS

circRNA 5':UCCAGGU-CUUC-----CAGUCAGUCAGUGU 3'


            |||: |: | |||:|| :||| |:


target  3':UGGUUAAUGGCGUACUUGUCGGU-GGUC-CGU 5'

 -12.90 1 RIC-seq
chrX:139865823:139865827:[+] chr3:33543171:33543175:[-] nonBSJ supported CDS

circRNA 5':AGGUC 3'


            |||


target  3':ACCAA 5'

 -3.10 1 RIC-seq
chrX:139865916:139865940:[+] chr3:33618724:33618752:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCCAAUAUA------UGUCUU 3'


            ||: |||| |||||


target  3':CCCGU--GGUCAACUAGACCUUACCACAGAC 5'

 -9.00 43 RIC-seq
chrX:139865916:139865940:[+] chr3:33618725:33618752:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCCAAUAUA------UGUCUU 3'


            ||: |||| |||||


target  3': CCGU--GGUCAACUAGACCUUACCACAGAC 5'

 -8.20 1 RIC-seq
chrX:139866041:139866072:[+] chr3:33543222:33543247:[-] nonBSJ supported CDS

circRNA 5':CCAAGUCUUCCGGAUAAUUUGGGUCUUCCUGA 3'


            ||||: |||||:|:| | ||| |||


target  3':UGUUCGAAAGGCUUGUGA---CGAGA--GAC 5'

 -21.70 16 RIC-seq