Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865839:139865856:[+] chr1:204991701:204991718:[+] nonBSJ supported 3UTR

circRNA 5':CAGUGUCUUCCAGAAAAA 3'


            |:|: ||: ||:||||


target  3':UUUAUUGAGCGUUUUUUC 5'

 -6.90 1 RIC-seq
chrX:139866152:139866179:[+] chr1:204988243:204988264:[+] nonBSJ supported 3UTR

circRNA 5':AUGUCUU-CCAGAAAAUCCUUGUCUUCCC 3'


            | ||| ||| |:||:|||||


target  3':GAGAGACUGGU-------GGACGGAAGGA 5'

 -18.00 2 RIC-seq
chrX:139865745:139865765:[+] chr1:204804269:204804283:[+] nonBSJ supported Intron

circRNA 5':AGAUCUUCCAGUCAAUCAGUG 3'


            ||||||||| ||||:


target  3':ACUAGAAGGU-----AGUCG 5'

 -18.40 1 RIC-seq