Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866152:139866181:[+] chr1:155978908:155978951:[-] nonBSJ supported 3UTR

circRNA 5':AUGUCUUCC-AGAAAAUCCU-------------UGUCUUCC-CUU 3'


            |:||:||| ||| |||: ::|||||| |::


target  3':CAUAGGAGGUUCUC--AGGGUAUCGAAAGUAAAGUAGAAGGUGGGA 5'

 -24.00 2 RIC-seq
chrX:139866286:139866350:[+] chr1:155978898:155978951:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCG 3'


            ||| |:||:||| :||||||||| |: :||||||| :||


target  3':AUCUGUGACCCAUAGGAGGUUCUCAGGGUAUCGAAAGUAAAG------UAGAAGGU-----GGGA 5'

 -34.50 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:155978898:155978951:[-] target - chr1:155978925-155978926 C>A RECA-EU ICGC
chr1:155978898:155978951:[-] target - chr1:155978926-155978927 A>T RECA-EU ICGC
chr1:155978908:155978951:[-] target - chr1:155978925-155978926 C>A RECA-EU ICGC
chr1:155978908:155978951:[-] target - chr1:155978926-155978927 A>T RECA-EU ICGC
chrX:139866286:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC