Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865363:139865407:[+] chr1:150437002:150437040:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAACAACUCCGGGUCUUC---CAGCGACUUCAAGUCUUCC 3'


            ||: |||| :|||||| ||| |||| | |::|


target  3':CCCGCAAGGACCUCU---UCCAGAACUACGUC-CUGA----CUGGGG 5'

 -22.30 12 RIC-seq
chrX:139866125:139866147:[+] chr1:150337324:150337345:[+] nonBSJ supported CDS

circRNA 5':AUGGCCUCCAGGUCUUCC-AGACU 3'


            || ||| || ||||


target  3':AACAAGAGAUAUGU--GGUUCUGC 5'

 -9.80 21 RIC-seq
chrX:139866634:139866656:[+] chr1:150418784:150418823:[+] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAG------------------CAUCUGCU 3'


            ||||| ||||| ||:||||


target  3':AAGGUCACGAAGACAAUUACUCCCAGGCAAAAAGUGGACG 5'

 -22.70 9 RIC-seq
chrX:139866634:139866662:[+] chr1:150418777:150418823:[+] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAG------------------CAUCUGCUCGUCUU 3'


            ||||| ||||| ||:||||| :|||


target  3':AAGGUCACGAAGACAAUUACUCCCAGGCAAAAAGUGGACGAAUAGAU 5'

 -27.60 3 RIC-seq
chrX:139866634:139866672:[+] chr1:150418785:150418823:[+] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAA-CAUCUC 3'


            ||||| ||||| || |||: ||:||


target  3':AAGGUCACGAAGACAAUU-ACUCCCAGGCAAAAAGUGGAC 5'

 -20.60 1 RIC-seq
chrX:139866635:139866656:[+] chr1:150418784:150418821:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGCUUCCAG------------------CAUCUGCU 3'


            |||| ||||| ||:||||


target  3': GGUCACGAAGACAAUUACUCCCAGGCAAAAAGUGGACG 5'

 -19.90 1 RIC-seq