Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865468:139865507:[+] chr2:48686981:48687018:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGU-CUUCCGGACAAUCCAUGUCUUCCAAGAAGCUC 3'


            ||||||| ||||||| :||| ||| ||||


target  3':AAGGUACAUGAAGGCCCACUCUG-GCAGUUGGUG--UCGAA 5'

 -35.30 10 RIC-seq
chrX:139865526:139865570:[+] chr2:48687013:48687049:[+] nonBSJ supported CDS

circRNA 5':AAGUCUUCCAGCAAAUCCAGUC-UUC--CAGCAA-UUACUGGUCUUCCA 3'


            ||:||| ||| ||| |||| |:| |||| |||||


target  3':AUCGGAA------------CAGCAAGACGUCGAAGAGUUACCA-AAGGUA 5'

 -22.30 10 RIC-seq
chrX:139866312:139866346:[+] chr2:48718232:48718262:[+] nonBSJ supported CDS

circRNA 5':CCAUAGC-UUCCGAAAAAUCCAGGUCUUCCAGGAAA 3'


            ||| || ||| | ||| || |||


target  3':CGUA-CGUAAGUCGACUUUC-UCCUGAUUA--CUU 5'

 -8.10 1 RIC-seq
chrX:139866348:139866362:[+] chr2:48718249:48718262:[+] nonBSJ supported CDS

circRNA 5':CCGUGUCUUCCAGCA 3'


            |:||: || ||||


target  3':CGUACGUAA-GUCGA 5'

 -10.70 7 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:48686981:48687018:[+] target - chr2:48687013-48687014 A>G LICA-CN ICGC
chr2:48718232:48718262:[+] target - chr2:48718253-48718254 G>A LICA-CN ICGC
chr2:48718249:48718262:[+] target - chr2:48718253-48718254 G>A LICA-CN ICGC
chrX:139866312:139866346:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC