Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866339:[+] chr1:196394984:196395001:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUC 3'


            |||: |:| |||||||


target  3':ACGAGAGUUA------UCCAGAAC 5'

 -12.10 1 RIC-seq
chrX:139866316:139866343:[+] chr1:196394984:196395010:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGG 3'


            |||: |:| || |:|||| ||


target  3':ACGAGAGUUAUCCAGAACUAGAAAUUC 5'

 -12.70 9 RIC-seq
chrX:139866316:139866350:[+] chr1:196394984:196395020:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAU--CCG 3'


            |||: |:| || |:|||| ||| ||


target  3':ACGAGAGUUAUCCAGAACUAGAAAUUCCCGACUUGGA 5'

 -16.30 1 RIC-seq
chrX:139866316:139866353:[+] chr1:196394984:196395022:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAU--CCGUGU 3'


            |||: |:| || |:|||| ||| || ||


target  3':ACGAGAGUUAUCCAGAACUAGAAAUUCCCGACUUGGAAC 5'

 -16.40 9 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:196394984:196395010:[-] target 1679226 chr1:196395007-196395008 T>C Developmental_and_epileptic_encephalopathy,_57 ClinVar
chr1:196394984:196395020:[-] target 1679226 chr1:196395007-196395008 T>C Developmental_and_epileptic_encephalopathy,_57 ClinVar
chr1:196394984:196395022:[-] target 1679226 chr1:196395007-196395008 T>C Developmental_and_epileptic_encephalopathy,_57 ClinVar
chrX:139866316:139866339:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC