Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865490:139865509:[+] chr1:107683571:107683584:[+] nonBSJ supported 5UTR

circRNA 5':AUGUCU-UCCAAGAAGCUCCA 3'


            ||:|| ||| ||||


target  3':CACGGAGAGG------GAGG 5'

 -12.10 1 RIC-seq
chrX:139865490:139865521:[+] chr1:107683559:107683584:[+] nonBSJ supported 5UTR

circRNA 5':AUGUCU-UCCAAGAAGCUCCAAGUCUUCCAGUA 3'


            ||:|| ||| ||||||: |||


target  3':CACGGAGAGG------GAGGUUUUUAUA-UCAC 5'

 -14.60 15 RIC-seq
chrX:139865498:139865518:[+] chr1:107683573:107683588:[+] nonBSJ supported 5UTR

circRNA 5':CAAGAAGCUCCAAGUCUUCCA 3'


            ||| ||: |||:||


target  3':UUUCCACGG-----AGAGGGA 5'

 -10.60 14 RIC-seq