Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866314:139866344:[+] chr1:32095625:32095654:[-] nonBSJ supported 3UTR

circRNA 5':AUAGCUUCCGAAAAAUCCAGGUCUU-CCAGGA 3'


            ||||| | || |:|:|| |||::


target  3': GUCGACGUCUCCCGUC-UUCGGACCGGUUUC 5'

 -13.00 12 RIC-seq
chrX:139866315:139866344:[+] chr1:32095626:32095654:[-] nonBSJ supported 3UTR

circRNA 5':UAGCUUCCGAAAAAUCCAGGUCUU-CCAGGA 3'


            |||| | || |:|:|| |||::


target  3': UCGACGUCUCCCGUC-UUCGGACCGGUUUC 5'

 -11.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866314:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866315:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC