Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865417:139865485:[+] chr1:65230461:65230534:[+] nonBSJ supported Intron

circRNA 5':AAGGUCUUCCAGAUAAUCC-------------UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGACA 3'


            ||| |||| :|||| ||||| |||| ||:| ||| || ||:||: :|||


target  3': UCCUGAAGUAG-GUUAGUCAACUUCCGGAAUACUCGU---UCUUCACUUCAAAGGACAUCUUCAAG--ACGGAGU-UCUGA 5'

 -26.50 1 RIC-seq
chrX:139865422:139865485:[+] chr1:65230461:65230531:[+] nonBSJ supported Intron

circRNA 5': CUUCCAGAUAAUCC-------------UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGACA 3'


            |||| :|||| ||||| |||| ||:| ||| || ||:||: :|||


target  3':UGAAGUAG-GUUAGUCAACUUCCGGAAUACUCGU---UCUUCACUUCAAAGGACAUCUUCAAG--ACGGAGU-UCUGA 5'

 -21.30 1 RIC-seq