Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866310:139866341:[+] chr1:55551753:55551773:[-] nonBSJ supported Intron

circRNA 5':AUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCA 3'


            ||||:|:|:|| :::|||||


target  3':AAGGUGUUGGAG-----------UUGGAAGGG 5'

 -19.90 23 RIC-seq
chrX:139866331:139866395:[+] chr1:55551726:55551769:[-] nonBSJ supported Intron

circRNA 5':CAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCA 3'


            |||| |||| ||||| ||:| |||| ||| :|| || ||


target  3':UUCCAC-------------CACACUUUUUCGUUCUA-UGUA-AAGG-UGU--UGG---AGUUGGA 5'

 -21.40 2 RIC-seq
chrX:139866331:139866395:[+] chr1:55551726:55551772:[-] nonBSJ supported Intron

circRNA 5':CAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUG-UCUUCCA 3'


            |||| |||| ||||| ||:| |||| ||| :|| :|||||


target  3':UUCCAC-------------CACACUUUUUCGUUCUA-UGUA-AAGG-UGU--UGGAGUUGGAAGG 5'

 -25.80 25 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866310:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC