Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866021:139866037:[+] chr17:8280885:8280902:[-] nonBSJ supported CDS

circRNA 5':AUCCA-CGUCUUCCCAAC 3'


            ||| |:||||| |||


target  3':AAGGACGUAGAAGAGUUA 5'

 -13.00 27 RIC-seq
chrX:139866052:139866106:[+] chr17:8280873:8280913:[-] nonBSJ supported CDS

circRNA 5': GGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUC-CAAAAAAGCCAUGUCUUCCA 3'


            |||| |:|| |||||| |:||||| ||| ||||||


target  3':UUCUAAUGAAAU---AAGGAC--------GUAGAAGAGUUACCAA-----AGAAGGA 5'

 -23.10 8 RIC-seq
chrX:139866111:139866142:[+] chr17:8280885:8280911:[-] nonBSJ supported CDS

circRNA 5':AUCCA-CAUCUUC-CAAUGGCCUCCAGGUCUUCC 3'


            ||| ||||||| |||||| |||||


target  3':AAGGACGUAGAAGAGUUACCAA------AGAAG 5'

 -22.80 2 RIC-seq
chrX:139866111:139866143:[+] chr17:8280885:8280912:[-] nonBSJ supported CDS

circRNA 5':AUCCA-CAUCUUC-CAAUGGCCUCCAGGUCUUCCA 3'


            ||| ||||||| |||||| ||||||


target  3':AAGGACGUAGAAGAGUUACCAA------AGAAGG 5'

 -27.00 18 RIC-seq
chrX:139866111:139866143:[+] chr17:8280885:8280913:[-] nonBSJ supported CDS

circRNA 5':AUCCA-CAUCUUC-CAAUGGCCUCCAGGUCUUCCA 3'


            ||| ||||||| |||||| ||||||


target  3':AAGGACGUAGAAGAGUUACCAA------AGAAGGA 5'

 -26.80 1 RIC-seq
chrX:139866438:139866485:[+] chr17:8280877:8280913:[-] nonBSJ supported CDS

circRNA 5':GUACGUC-UUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUCCA 3'


            ||| |||| |:||||| ||| ||| ||||||


target  3':AAUGAAAUAAGGAC--------GUAGAAGA--GUUACCAA--AGAAGGA 5'

 -22.70 7 RIC-seq
chrX:139866444:139866485:[+] chr17:8280884:8280913:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUCCA 3'


            |||| |:||||| ||| ||| ||||||


target  3':UAAGGAC--------GUAGAAGA--GUUACCAA--AGAAGGA 5'

 -21.60 1 RIC-seq
chrX:139866473:139866539:[+] chr17:8280866:8280913:[-] nonBSJ supported CDS

circRNA 5':GGUAUGUCUUCCAACAAAGG-UACGUC-UUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUCCA 3'


            ||||:| |||: ||| |||| | |:||||| ||| ||||||


target  3':ACAUAUA---------UUCUAAUGAAAUAAGGAC--------GUAGAAGA---GUUACCAA-AGAAGGA 5'

 -22.30 10 RIC-seq