Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865661:139865694:[+] chr19:51165462:51165490:[-] nonBSJ supported CDS

circRNA 5':CAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUC 3'


            ||| ||| ||| |:|:


target  3':CUCGUCCGCC--CAGCCACUCUCCCU---CGCGC 5'

 -6.10 1 RIC-seq
chrX:139865661:139865702:[+] chr19:51165462:51165498:[-] nonBSJ supported CDS

circRNA 5':CAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            ||| ||| ||| :|:| || ||


target  3':CUCGUCCGCC--CAGCCACUCUCCCUC-GCGCUCC-GG-GGA 5'

 -10.30 15 RIC-seq
chrX:139865663:139865702:[+] chr19:51165463:51165498:[-] nonBSJ supported CDS

circRNA 5': GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCA 3'


            || ||| ||| :|:| || ||


target  3':UCGUCCGCC--CAGCCACUCUCCCUC-GCGCUCC-GG-GGA 5'

 -9.30 1 RIC-seq