Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865583:139865641:[+] chr1:156213245:156213281:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCAAGGUCUU 3'


            ||||||:|| |||| ||| || ||||| |||:||||


target  3':CAAGGUCUUU-----UGCAACU--UCC-------ACCGAAGG--------GUUUCAGAU 5'

 -25.80 11 RIC-seq
chrX:139866490:139866511:[+] chr1:156216020:156216043:[-] nonBSJ supported 5UTR

circRNA 5':AGGUA-CGUCUU-CCAGAAAAUCC 3'


            |:| |:|||| |||||| |:|


target  3':ACUACGGUAGAAGGGUCUUGUGGA 5'

 -18.00 13 RIC-seq
chrX:139866526:139866547:[+] chr1:156216023:156216043:[-] nonBSJ supported 5UTR

circRNA 5':AGCCAUGUCUUCCAGAAAAUCC 3'


            ||||| | |:|||||| |:|


target  3':ACGGUAGA-AGGGUCUUGUGGA 5'

 -20.70 14 RIC-seq
chrX:139866001:139866038:[+] chr1:156213676:156213713:[-] nonBSJ supported CDS

circRNA 5':ACCUCCCAGUCUUCCAGAAAA---UCCACGUCUUCCCAACA 3'


            |||| ||| |:: ||| ||||| ||||| ||


target  3':GGGAGAGUCUGGGAGUCGUGAAGAAGGUG----AGGGUAGUU 5'

 -28.70 1 RIC-seq
chrX:139866001:139866039:[+] chr1:156213676:156213712:[-] nonBSJ supported CDS

circRNA 5':ACCUCCCAGUCUUCCAGAAAA---UCCACGUCUUCCCAACAA 3'


            |||| ||| |:: ||| ||||| ||||| ||


target  3':GGGAGAGUCUGGGAGUCGUGAAGAAGGUG----AGGGUAGU 5'

 -29.30 1 RIC-seq
chrX:139866001:139866040:[+] chr1:156213676:156213713:[-] nonBSJ supported CDS

circRNA 5':ACCUCCCAGUCUUCCAGAAAA---UCCACGUCUUCCCAACAAU 3'


            |||| ||| |:: ||| ||||| ||||| |||


target  3':GGGAGAGUCUGGGAGUCGUGAAGAAGGUG----AGGGUAGUU 5'

 -30.00 40 RIC-seq
chrX:139866002:139866038:[+] chr1:156213676:156213713:[-] nonBSJ supported CDS

circRNA 5': CCUCCCAGUCUUCCAGAAAA---UCCACGUCUUCCCAACA 3'


            |||| ||| |:: ||| ||||| ||||| ||


target  3':GGGAGAGUCUGGGAGUCGUGAAGAAGGUG----AGGGUAGUU 5'

 -28.40 1 RIC-seq
chrX:139866332:139866362:[+] chr1:156215599:156215630:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCC---GUGUCUUCCA-GCA 3'


            |||| ||||| :||| || ||


target  3':AUCAGC---UCCUUCAUCGUCUACACCGCGUACGC 5'

 -9.50 11 RIC-seq
chrX:139866332:139866363:[+] chr1:156215599:156215627:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAA 3'


            |||| ||||| |||


target  3':AUCAGC---UCCUUCAUCGUCUACACCGCGUA 5'

 -9.80 2 RIC-seq
chrX:139866620:139866674:[+] chr1:156214025:156214089:[-] nonBSJ supported CDS

circRNA 5': AGGUCUUCCAGCAUCU-CCAGGGCUU------CCAGCA--UCUGCUC-GUCUUCCAACAUCUCCA 3'


            |||| |:||||| | |||:|:|: ||| :||||: |:|: |||


target  3':AUCCA-AGGGUCGACGUCGGUUCUGGUCACACCGGUGACACGGACGGUCCGGGUCCCGUCCAAGGA 5'

 -39.20 9 RIC-seq
chrX:139866621:139866647:[+] chr1:156214063:156214089:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCAUCUCCAGGGC---UUCCA 3'


            |:|| |||| | ||||||| ||||


target  3':ACGGACGGUCC--G-GGUCCCGUCCAAGGA 5'

 -28.80 7 RIC-seq