Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865681:139865711:[+] chr1:154574471:154574512:[-] nonBSJ supported 5UTR

circRNA 5': GAAAAAUCUGUGUCUU-CCAC-CAAA---------UCCAAGU 3'


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target  3':ACUGGC-AGAC-CAGAAUGGUGAGGCGACACGACCAAGGUUCGG 5'

 -23.50 2 RIC-seq
chrX:139866436:139866468:[+] chr1:154574614:154574633:[-] nonBSJ supported 5UTR

circRNA 5':AGGUACGUCUUCCAACAAAGGUACGUCUUCCAA 3'


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target  3':GCCU--CAG--GGUU---------CAAAGGGUC 5'

 -10.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:154574471:154574512:[-] target 3775740 chr1:154574471-154574472 TGACCGTCTGGTCTTACCACTCCGCTGTGCTGGTTCCAAGCCTGAGTG>T Aicardi-Goutieres_syndrome_6 ClinVar
chr1:154574471:154574512:[-] target 801553 chr1:154574479-154574480 TG>T Symmetrical_dyschromatosis_of_extremities ClinVar