Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865335:139865404:[+] chr1:153617630:153617692:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGUUUCCGA-------UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAA-GUCU 3'


            ||||| ||| :|:|| |:|| || ||||| ||| |||||| ||:| |||


target  3': GGUCCAC-AGGAAAACAAAAGCUGUAUAUAC-GU------AGGUUAA------CCAACAGGUCGACGAGGAACCAGU 5'

 -39.60 2 RIC-seq
chrX:139865335:139865404:[+] chr1:153617630:153617693:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGUUUCCGA-------UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAA-GUCU 3'


           |||||| ||| :|:|| |:|| || ||||| ||| |||||| ||:| |||


target  3':AGGUCCAC-AGGAAAACAAAAGCUGUAUAUAC-GU------AGGUUAA------CCAACAGGUCGACGAGGAACCAGU 5'

 -41.40 32 RIC-seq
chrX:139865337:139865404:[+] chr1:153617630:153617692:[+] nonBSJ supported CDS

circRNA 5': CAGGGUUUCCGA-------UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAA-GUCU 3'


            |||| ||| :|:|| |:|| || ||||| ||| |||||| ||:| |||


target  3':GGUCCAC-AGGAAAACAAAAGCUGUAUAUAC-GU------AGGUUAA------CCAACAGGUCGACGAGGAACCAGU 5'

 -37.50 1 RIC-seq
chrX:139865356:139865404:[+] chr1:153617630:153617689:[+] nonBSJ supported CDS

circRNA 5':UGUGUCAAG--GUCUUCCAACAAC------UCCG---GGUCUUCCAGCGACUUCAA-GUCU 3'


            ||||| || ||| ||| |||: ||| |||||| ||:| |||


target  3':CCACAGGAAAACAAAAGC-UGUAUAUACGUAGGUUAACCAACAGGUCGACGAGGAACCAGU 5'

 -30.30 1 RIC-seq