Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865797:139865853:[+] chr17:27872370:27872416:[+] nonBSJ supported 3UTR

circRNA 5':AAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGU-CAGUGUCUUCCAGAA 3'


            ||| || ||||| |:||| |||||| ||| ||| | | |||||


target  3':CUAG--AC-GAAGGGAUAAGG-UGGGU-----AGGUCA-UCAUGUCUC-GUCGGUCUA 5'

 -33.90 9 RIC-seq
chrX:139865802:139865853:[+] chr17:27872370:27872413:[+] nonBSJ supported 3UTR

circRNA 5':GUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGU-CAGUGUCUUCCAGAA 3'


            || ||||| |:||| |||||| ||| ||| | | |||||


target  3':GAC-GAAGGGAUAAGG-UGGGU-----AGGUCA-UCAUGUCUC-GUCGGUCUA 5'

 -33.80 10 RIC-seq
chrX:139865819:139865853:[+] chr17:27872370:27872402:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCAGUCAGU-CAGUGUCUUCCAGAA 3'


            |||| :| |||||| ||| ||| | | |||||


target  3':AAGGUG-GGUAGGUCA-UCAUGUCUC-GUCGGUCUA 5'

 -28.40 1 RIC-seq
chrX:139865830:139865847:[+] chr17:27872367:27872384:[+] nonBSJ supported 3UTR

circRNA 5':CCAGU-CAGUCAGUGUCUU 3'


            ||| |||:||| :|||


target  3':UGUCUCGUCGGUC-UAGAU 5'

 -15.60 1 RIC-seq
chrX:139865941:139865968:[+] chr17:27818810:27818842:[+] nonBSJ supported CDS

circRNA 5':CCUG-----AAG-AUCCACGUCUUCCAGAAAAUC 3'


            ||| ||| ||| ||: ||||||


target  3':AGACCUCCGUUCUUAGAUGUUUCAACGCUUUUA 5'

 -8.40 26 RIC-seq
chrX:139865944:139865968:[+] chr17:27818810:27818834:[+] nonBSJ supported CDS

circRNA 5':GAAG-AUCCACGUCUUCCAGAAAAUC 3'


            ||| ||| ||: ||||||


target  3':GUUCUUAGAUGUUUCAACGCUUUUA 5'

 -7.90 3 RIC-seq
chrX:139866007:139866019:[+] chr17:27818820:27818831:[+] nonBSJ supported CDS

circRNA 5':CAGUCUUCCAGAA 3'


            |:||| ||:|


target  3':CUUAGAU-GUUUC 5'

 -4.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:27818810:27818834:[+] target 3383963 chr17:27818822-27818823 T>C Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar
chr17:27818810:27818834:[+] target 3382189 chr17:27818826-27818827 AG>A Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar
chr17:27818810:27818842:[+] target 3383963 chr17:27818822-27818823 T>C Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar
chr17:27818810:27818842:[+] target 3382189 chr17:27818826-27818827 AG>A Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar
chr17:27818820:27818831:[+] target 3383963 chr17:27818822-27818823 T>C Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar
chr17:27818820:27818831:[+] target 3382189 chr17:27818826-27818827 AG>A Developmental_delay_with_or_without_intellectual_impairment_or_behavioral_abnormalities ClinVar