Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866287:139866328:[+] chr19:21305436:21305478:[+] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCC--GAAAAA 3'


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target  3':CCUUUUAUGUAUGCUCUUU-GUUUAGACUUCUCUUCAUCUUUUA 5'

 -8.10 1 RIC-seq
chrX:139866754:139866791:[+] chr19:21300125:21300172:[+] nonBSJ supported CDS

circRNA 5':UCCAUG-UCUUC-CAACG----------UCUCCAGUGUGCUGAUCUUCUG 3'


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target  3':CGGUGUAAGAAGUGUAGACAUCCCAAAGAGAGGUCAUAC--UUAGUAGAA 5'

 -30.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:21300125:21300172:[+] target - chr19:21300153-21300154 A>G RECA-EU ICGC
chrX:139866287:139866328:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC