Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866617:139866658:[+] chr19:21281658:21281717:[+] nonBSJ supported CDS

circRNA 5':UCCAGG----UCUUCCAGCAUC----------------UCCAGGGCUUCCAGCAUC-UGCUCG 3'


            || || || |||| |||| |||||||||: || |||||


target  3': GGACCCCUAAGUAGGUGGUAGAGUGUAUAGAAGUAUAAGGUCCCGAGAAAA--AGAACGAGA 5'

 -38.40 13 RIC-seq
chrX:139866617:139866671:[+] chr19:21281645:21281717:[+] nonBSJ supported CDS

circRNA 5':UCCAGG----UCUUCCAGCAUC----------------UCCAGGGCUUCCAGCAUC-UGCUCGUCUUCCAACAUCU 3'


            || || || |||| |||| |||||||||: || ||||| |||


target  3': GGACCCCUAAGUAGGUGGUAGAGUGUAUAGAAGUAUAAGGUCCCGAGAAAA--AGAACGAGAUCUGACCACUAGC 5'

 -38.90 2 RIC-seq