Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865800:139865829:[+] chr4:1235603:1235631:[-] nonBSJ supported 5UTR

circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAG-GUCUU 3'


            ||: | |||||| :|||| |||:


target  3':AUCGGCGUAGGUCUACAG--GGGUCACAGGU 5'

 -22.80 11 RIC-seq
chrX:139865800:139865829:[+] chr4:1235604:1235631:[-] nonBSJ supported 5UTR

circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAG-GUCUU 3'


            ||: | |||||| :|||| |||:


target  3': UCGGCGUAGGUCUACAG--GGGUCACAGGU 5'

 -22.30 1 RIC-seq
chrX:139865772:139865793:[+] chr4:1222059:1222079:[-] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCCAGGUCUUCCA 3'


            ||| ||||||||:|||


target  3':ACUUGAAG-AGGUCCAGGAGGG 5'

 -25.70 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:1235603:1235631:[-] target - chr4:1235614-1235615 A>G RECA-EU ICGC
chr4:1235604:1235631:[-] target - chr4:1235614-1235615 A>G RECA-EU ICGC