Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866580:139866604:[+] chr15:73044598:73044616:[-] nonBSJ supported 3UTR

circRNA 5':AGCUACGUCUUCCAACAAAUCCAUG 3'


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target  3':CCGA--CAGAAGGUUU----GGUGA 5'

 -17.10 2 RIC-seq
chrX:139866650:139866676:[+] chr15:73044592:73044615:[-] nonBSJ supported 3UTR

circRNA 5':AUCU---GCUCGUCUUCCAACAUCUCCACG 3'


            ||| ||| ||||||||| ||||


target  3':AAGAAACCGA-CAGAAGGUUU----GGUG 5'

 -21.30 1 RIC-seq
chrX:139866650:139866676:[+] chr15:73044592:73044616:[-] nonBSJ supported 3UTR

circRNA 5':AUCU---GCUCGUCUUCCAACAUCUCCACG 3'


            ||| ||| ||||||||| ||||


target  3':AAGAAACCGA-CAGAAGGUUU----GGUGA 5'

 -21.00 28 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866580:139866604:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC