Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865704:139865755:[+] chr1:20977738:20977784:[+] nonBSJ supported 3UTR

circRNA 5':AUC-CAAGUCUUCCAGUAAAU----CUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAG 3'


            || ||| |||| |||| ||||| ||| |:|:|:|| ||


target  3':AAGUGUU---AAGGACAUUCUCUCCGAUCA-----GUCCUCCC---UUUGGGAGUUCA 5'

 -15.00 2 RIC-seq
chrX:139866134:139866178:[+] chr1:20975048:20975109:[+] nonBSJ supported CDS

circRNA 5':AGGUC--UUCCAGACU-AUCCAUGUCUUCCAGAAAAU----------------CCU-UGUCUUCC 3'


            ||:| |||| |: |||||:|| |||| || ||: :||


target  3':GUCGGCAAAGGCGGGGCUAGGUGCAU--GGUCGACGACUUCCCGUUGACGUCCGGCUACGAGAG 5'

 -23.90 2 RIC-seq
chrX:139866134:139866198:[+] chr1:20975047:20975109:[+] nonBSJ supported CDS

circRNA 5':AGGUC--UUCCAGACU-AUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUUCCAA 3'


            ||:| |||| |: |||||:|| |||| || |: |||: ||


target  3':GUCGGCAAAGGCGGGGCUAGGUGCAU--GGUCGACGACUUCCCGUU--GACGUCCGGCUACGAGAGU 5'

 -24.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:20975047:20975109:[+] target 3578228 chr1:20975063-20975064 C>T Autosomal_recessive_early-onset_Parkinson_disease_6 ClinVar
chr1:20975047:20975109:[+] target 2417 chr1:20975070-20975071 C>T Parkinson_disease,_autosomal_recessive_early-onset,_digenic,_PINK1/DJ1 ClinVar
chr1:20975047:20975109:[+] target 3731500 chr1:20975086-20975087 C>A Autosomal_recessive_early-onset_Parkinson_disease_6 ClinVar
chr1:20975048:20975109:[+] target 3578228 chr1:20975063-20975064 C>T Autosomal_recessive_early-onset_Parkinson_disease_6 ClinVar
chr1:20975048:20975109:[+] target 2417 chr1:20975070-20975071 C>T Parkinson_disease,_autosomal_recessive_early-onset,_digenic,_PINK1/DJ1 ClinVar
chr1:20975048:20975109:[+] target 3731500 chr1:20975086-20975087 C>A Autosomal_recessive_early-onset_Parkinson_disease_6 ClinVar