Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866630:139866701:[+]	chr6:26285501:26285573:[-]	nonBSJ supported	CDS	circRNA 5': GCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCC----ACGUCUUCC-AGCAUCUCUGUGUCUUC-CA 3' \|\| \|\|\| \|\|\|\| \|\| :\| :\|\| \|\|\|\|\| \|\|::\|\|\|\| \|:\|\|:\| :\| \|\|\|\|:\| \|\| target 3':ACG-AGACACAUUCACUGUCGCAG-UGCUUAGUGCA----AGAGGUCCUUGUGGAAGUCUUGUGGU-GCUCAGAGGAGUA 5'	-35.80	1	RIC-seq
chrX:139866630:139866702:[+]	chr6:26285501:26285572:[-]	nonBSJ supported	CDS	circRNA 5': GCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCC----ACGUCUUCC-AGCAUCUCUGUGUCUUC-CAG 3' \|\| \|\|\| \|\|\|\| \|\| :\| :\|\| \|\|\|\|\| \|\|::\|\|\|\| \|:\|\|:\| :\| \|\|\|\|:\| \|\| target 3':ACG-AGACACAUUCACUGUCGCAG-UGCUUAGUGCA----AGAGGUCCUUGUGGAAGUCUUGUGGU-GCUCAGAGGAGU 5'	-36.30	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr6:26285501:26285572:[-]	target	-	chr6:26285503-26285504	C>T	LICA-CN	ICGC
chr6:26285501:26285572:[-]	target	-	chr6:26285519-26285520	G>A	PRAD-CA	ICGC
chr6:26285501:26285573:[-]	target	-	chr6:26285503-26285504	C>T	LICA-CN	ICGC
chr6:26285501:26285573:[-]	target	-	chr6:26285519-26285520	G>A	PRAD-CA	ICGC