Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865786:139865818:[+] chr2:153471441:153471468:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAA 3'


            |||| ||| ||||::|||||||| |||


target  3':AAGAA--UCAA--AGUCGUAGAAGGUCA-UCUC 5'

 -25.90 1 RIC-seq
chrX:139865786:139865823:[+] chr2:153471436:153471468:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCA 3'


            |||| ||| ||||::|||||||| ||| |||


target  3':AAGAA--UCAA--AGUCGUAGAAGGUCA-UCUCGAGGA 5'

 -31.20 44 RIC-seq
chrX:139866278:139866299:[+] chr2:153483095:153483115:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAA-AUCCUUGU 3'


            || ||| ||||| ||| ||


target  3':AAC-GAACUUCUUUCUAGUUAC 5'

 -6.70 1 RIC-seq
chrX:139866316:139866337:[+] chr2:153483098:153483114:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCU 3'


            |||| ||| || ||:||


target  3':ACGAA--CUUCUU---UCUAGU 5'

 -7.20 4 RIC-seq
chrX:139866349:139866398:[+] chr2:153473630:153473669:[+] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCAC-GUCUUCCAACAAAGCCAUGUCUUCCAUCA 3'


            |: |||||| ||||| :|||| |||| |||| ||


target  3':ACGAA-AAGGUCA---AGGUGUUAGAACCU-------GUACCGAAGUAAGA 5'

 -23.20 5 RIC-seq
chrX:139866349:139866398:[+] chr2:153473631:153473669:[+] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCAC-GUCUUCCAACAAAGCCAUGUCUUCCAUCA 3'


            |: |||||| ||||| :|||| |||| |||| ||


target  3':ACGAA-AAGGUCA---AGGUGUUAGAACCU-------GUACCGAAGUAAG 5'

 -23.40 1 RIC-seq
chrX:139866704:139866752:[+] chr2:153463874:153463908:[+] nonBSJ supported CDS

circRNA 5':AUCUUCAUGUCUUCCAACAACUACCCAGUCUUCCAUCAACUGGCUCAAU 3'


            ||||||| ||:| |:| ||||||||||| |||||


target  3': AGAAGUA-AGGACU-----------UUACAAGGUAGUUGAA-GAGUUU 5'

 -27.10 9 RIC-seq
chrX:139866726:139866752:[+] chr2:153463874:153463901:[+] nonBSJ supported CDS

circRNA 5':ACCC--AGUCUUCCAUCAACUGGCUCAAU 3'


            || |:| ||||||||||| |||||


target  3':AGGACUUUACAAGGUAGUUGAA-GAGUUU 5'

 -22.80 9 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC