Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865691:139865718:[+] chr3:54604091:54604114:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCACCAAAUCCAAGUCU-UCCAG 3'


            ||| || || |||||| ||||


target  3':UCAGUAGUAGG----GGUUCACAUAGGU 5'

 -16.60 1 RIC-seq
chrX:139865691:139865719:[+] chr3:54604089:54604114:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCACCAAAUCCAAGUCU-UCCAGU 3'


            ||| || || |||||| ||||:


target  3':UCAGUAGUAGG----GGUUCACAUAGGUUU 5'

 -17.00 17 RIC-seq
chrX:139865691:139865719:[+] chr3:54604090:54604114:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCACCAAAUCCAAGUCU-UCCAGU 3'


            ||| || || |||||| ||||:


target  3':UCAGUAGUAGG----GGUUCACAUAGGUU 5'

 -17.00 1 RIC-seq
chrX:139865715:139865735:[+] chr3:54604103:54604132:[+] nonBSJ supported CDS

circRNA 5':CCAGUAAAUCU--------AGU--UCUUCCA 3'


            |||:|| ||| || |||


target  3': GUCGUUAAUACAACUUCUUCAGUAGUAGGG 5'

 -7.20 1 RIC-seq
chrX:139865715:139865738:[+] chr3:54604089:54604132:[+] nonBSJ supported CDS

circRNA 5':CCAGUAA-------------------AUCU---AGUUCUUCCAGAA 3'


            |||:|| |||: ||| ||||:|


target  3': GUCGUUAAUACAACUUCUUCAGUAGUAGGGGUUCACAUAGGUUU 5'

 -11.10 20 RIC-seq