Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865792:139865809:[+] chr3:186504989:186505006:[+] nonBSJ supported CDS

circRNA 5':CAGUCAAUCA-GUGUCUUC 3'


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target  3': UCAGGUGGAACGCGGAGC 5'

 -13.20 2 RIC-seq
chrX:139866632:139866694:[+] chr3:186503766:186503810:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGGGCUU-CCAGCAUCUGCUCGUCUUCCAACAUCUCCACGU-CUUCCAGCAUCUCUGUG 3'


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target  3':GAGAGGGCCCACAUGGUUGU---------------UGUUAUACACCACGAA-GUCG----GACGU 5'

 -29.30 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:186503766:186503810:[+] target 1712247 chr3:186503804-186503805 G>T Neurodevelopmental_disorder ClinVar
chr3:186504989:186505006:[+] target - chr3:186504990-186504991 G>A PACA-CA ICGC