Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865657:139865691:[+] chr8:124096443:124096478:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCUAAUCCAUGUCUUCCAGA-----AAAAU-CUGU 3'


            |||| || || ||||: |||| ||||| |||


target  3':AAAGG--GACUACGUACGU---GUCUCUAGCUUUUAUGACU 5'

 -12.50 1 RIC-seq
chrX:139865657:139865703:[+] chr8:124096421:124096478:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCUAAUCCAUGUCUUCCAGA-----AAAAU-CUG--------UGUCUUC-CA-CCAA 3'


            |||| || || ||||: |||| ||||| ||| ||||:|| || |||


target  3':AAAGG--GACUACGUACGU---GUCUCUAGCUUUUAUGACUACUAAGUACAGGAGAGUAGGUC 5'

 -24.30 16 RIC-seq
chrX:139865657:139865719:[+] chr8:124096420:124096478:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCUAAUCCAUGUCUUCCAGA-----AAAAU-CUG--------UGUCUUCCACCAAAUCCAAGUCUUCCAGU 3'


            |||| || || ||||: |||| ||||| ||| ||||:|| || |||||:


target  3':AAAGG--GACUACGUACGU---GUCUCUAGCUUUUAUGACUACUAAGUACAGGAG-------------AGUAGGUCG 5'

 -26.20 13 RIC-seq
chrX:139865773:139865813:[+] chr8:124154527:124154570:[+] nonBSJ supported CDS

circRNA 5':GAAAGAAAUCCAGGUCUUCCAGUCAAUCA------GUGUCUUC--CAGA 3'


            ||||| ::||| |||||| :|| ||| |||


target  3':AUUUCUGAC---UUAGACGGUCAGCCAUAAAUCCGUAC-GAACAAGUC 5'

 -18.00 1 RIC-seq
chrX:139865812:139865852:[+] chr8:124154526:124154570:[+] nonBSJ supported CDS

circRNA 5':GAAAGAAAUCCAGGUCUUCCAGUCAGUCA------GUGUCUUC--CAGA 3'


            ||||| ::||| |||||| || :|| ||| |||


target  3':AUUUCUGAC---UUAGACGGUCAGCCAUAAAUCCGUAC-GAACAAGUCG 5'

 -19.70 37 RIC-seq
chrX:139865812:139865852:[+] chr8:124154527:124154570:[+] nonBSJ supported CDS

circRNA 5':GAAAGAAAUCCAGGUCUUCCAGUCAGUCA------GUGUCUUC--CAGA 3'


            ||||| ::||| |||||| || :|| ||| |||


target  3':AUUUCUGAC---UUAGACGGUCAGCCAUAAAUCCGUAC-GAACAAGUC 5'

 -19.50 3 RIC-seq
chrX:139865820:139865848:[+] chr8:124141344:124141367:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUGUCUUC 3'


            |||:| |||| :|| |||: ||||


target  3':UGGUUC-GAAG--UAGA-AGUUG-AGAAA 5'

 -15.30 36 RIC-seq
chrX:139865833:139865849:[+] chr8:124141351:124141367:[+] nonBSJ supported CDS

circRNA 5':GUCAGUCAGUGUCUUCC 3'


            |||: ::|||||


target  3':UGGUUCGAAGUAGAAGU 5'

 -7.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:124141344:124141367:[+] target - chr8:124141361-124141362 G>T LICA-CN ICGC
chr8:124141351:124141367:[+] target - chr8:124141361-124141362 G>T LICA-CN ICGC