Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866296:139866320:[+] chr6:38120009:38120033:[+] nonBSJ supported CDS

circRNA 5':UUGUCUUCCCUCA-AAUCCAUAGCUU 3'


            ||| || ||: ||||:|:


target  3':UACAUUGUAU-GUCUUGUGUAUUGGA 5'

 -7.20 1 RIC-seq
chrX:139866296:139866320:[+] chr6:38120010:38120033:[+] nonBSJ supported CDS

circRNA 5':UUGUCUUCCCUCA-AAUCCAUAGCUU 3'


            ||| || ||: ||||:|:


target  3':UACAUUGUAU-GUCUUGUGUAUUGG 5'

 -6.60 22 RIC-seq
chrX:139866308:139866320:[+] chr6:38120010:38120021:[+] nonBSJ supported CDS

circRNA 5':AAAUCCAUAGCUU 3'


            ||: ||||:|:


target  3':CUUGUGUAUUGG 5'

 -6.50 1 RIC-seq
chrX:139866321:139866334:[+] chr6:38120053:38120065:[+] nonBSJ supported CDS

circRNA 5':CCGAAAAAUCCAGG 3'


            |||| |||


target  3':AGCUUACAC-GUCA 5'

 -5.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866296:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866308:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC