Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866549:139866583:[+] chrX:38548038:38548075:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAGAAAAUAUA-UGUCU---UCCAACUAAGCU 3'


            ||||| :||||||| || || ||| || :|


target  3':CUAGAAAA-UUUUUAUAAAACUGAACAAGGGGGAAGUGU 5'

 -14.90 10 RIC-seq
chrX:139866670:139866696:[+] chrX:38540494:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGC----AUCUCUGUGUC 3'


            ||| |||:| :|||||| || :|::|||


target  3':AAGGUUUGCGGUGAGGUCGCUACUAAGGGUACAA 5'

 -23.90 1 RIC-seq
chrX:139866670:139866702:[+] chrX:38540485:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCA-----UCUC-UGU--GUCUUCCAG 3'


            ||| |||:| :|||||| ||:| ||| ||| ||||


target  3':AAGGUUUGCGGUGAGGUCGCUACUAAGGGUACAAUCAG-AGGUA 5'

 -30.10 3 RIC-seq
chrX:139866670:139866702:[+] chrX:38540497:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCAUCUCUGUGUCUUCCAG 3'


            ||| |||:| :|||||| :|| |:|||


target  3':AAGGUUUGCGGUGAGGUCGC-----UACUAAGGGUA 5'

 -24.80 1 RIC-seq
chrX:139866670:139866711:[+] chrX:38540484:38540526:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCAUCUCUGUGUCUUCCAGCA---UCUUCAU 3'


            ||| |||:| :|||||| :|| |:||| |||:|||


target  3': AGGUUUGCGGUGAGGUCGC-----UACUAAGGGUACAAUCAGAGGUAC 5'

 -29.30 1 RIC-seq
chrX:139866670:139866711:[+] chrX:38540484:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCAUCUCUGUGUCUUCCAGCA---UCUUCAU 3'


            ||| |||:| :|||||| :|| |:||| |||:|||


target  3':AAGGUUUGCGGUGAGGUCGC-----UACUAAGGGUACAAUCAGAGGUAC 5'

 -30.20 25 RIC-seq
chrX:139866670:139866713:[+] chrX:38540483:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCAUCUCUGUGUCUUCCAGCA---UCUUCAUGU 3'


            ||| |||:| :|||||| :|| |:||| |||:||||


target  3':AAGGUUUGCGGUGAGGUCGC-----UACUAAGGGUACAAUCAGAGGUACU 5'

 -33.20 4 RIC-seq
chrX:139866670:139866718:[+] chrX:38540457:38540527:[+] nonBSJ supported CDS

circRNA 5':CUCC--ACGUC-UUCCAGCA-----UCUC-UGU--GUCUUCCA-----------GCAUCUUCAUGUCUUCC 3'


            ||| |||:| :|||||| ||:| ||| ||| |||| :| ||||: | ||


target  3':AAGGUUUGCGGUGAGGUCGCUACUAAGGGUACAAUCAG-AGGUACUUUGAUCAAUGGUCUAGUAUUGUUGGG 5'

 -33.70 29 RIC-seq
chrX:139866671:139866711:[+] chrX:38540484:38540525:[+] nonBSJ supported CDS

circRNA 5':UCC--ACGUC-UUCCAGCAUCUCUGUGUCUUCCAGCA---UCUUCAU 3'


            || |||:| :|||||| :|| |:||| |||:|||


target  3': GGUUUGCGGUGAGGUCGC-----UACUAAGGGUACAAUCAGAGGUAC 5'

 -27.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:38540457:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540483:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540484:38540525:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540484:38540526:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540484:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540485:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540494:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar
chrX:38540497:38540527:[+] target 11629 chrX:38540512-38540513 G>T Intellectual_disability,_X-linked_58 ClinVar