Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865530:139865565:[+] chr2:201363657:201363691:[-] nonBSJ supported CDS

circRNA 5':CUUCC--AGCAAAUCCAGUCU--UCCAGCAAUUAC--UGGUC 3'


            ||| ||| |||| |||| || |||:


target  3':AAAGUUAUCG-------CAGACAAGGUAGUCAAAAACACCGU 5'

 -11.80 14 RIC-seq
chrX:139865544:139865565:[+] chr2:201363666:201363691:[-] nonBSJ supported CDS

circRNA 5':AGUCU--UCCAGCAAUUAC--UGGUC 3'


            |||| |||| || |||:


target  3':GCAGACAAGGUAGUCAAAAACACCGU 5'

 -11.50 1 RIC-seq
chrX:139865544:139865565:[+] chr2:201363667:201363691:[-] nonBSJ supported CDS

circRNA 5':AGUCU--UCCAGCAAUUAC--UGGUC 3'


            |||| |||| || |||:


target  3': CAGACAAGGUAGUCAAAAACACCGU 5'

 -10.30 1 RIC-seq
chrX:139865545:139865574:[+] chr2:201363643:201363680:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCAAUUACUG------GUCU--UCCACCAA 3'


            |||:||||| |||| |||| ||


target  3':AGGAGGGUCGACGAAAAGUUAUCGCAGACAAGGUAGUC 5'

 -20.20 17 RIC-seq