Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865838:139865859:[+] chr7:148718158:148718181:[-] nonBSJ supported CDS

circRNA 5': UC-AGU-GUCUUCCAGAAAAAUCU 3'


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target  3':AGGUUCAGCAGAAGAAGGAG-UAGU 5'

 -10.20 1 RIC-seq
chrX:139866604:139866635:[+] chr7:148718145:148718181:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCUAUAUCUCCAGGUC------UUCCAGCAUCU 3'


            ||||||| |: ||||:||| |||| ||||


target  3':AAGAAGGAAUUGAAGGUUCAGCAGAAGAAGGA-GUAGU 5'

 -27.90 1 RIC-seq
chrX:139866604:139866639:[+] chr7:148718145:148718184:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCUAUAUCUCCAGGUC------UUCCAGCAUCUCCAG 3'


            ||||||| |: ||||:||| |||| |||| ||


target  3':AAGAAGGAAUUGAAGGUUCAGCAGAAGAAGGA-GUAGUAGU 5'

 -28.80 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:148718145:148718181:[-] target - chr7:148718168-148718169 C>G BTCA-JP|LICA-CN ICGC
chr7:148718145:148718184:[-] target - chr7:148718168-148718169 C>G BTCA-JP|LICA-CN ICGC
chr7:148718158:148718181:[-] target - chr7:148718168-148718169 C>G BTCA-JP|LICA-CN ICGC