Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866047:139866072:[+] chr1:113471866:113471891:[-] nonBSJ supported CDS

circRNA 5': CU-UCCGGAUAAUUUGGGUCUUC--CUGA 3'


            || :||:| ::: :|:||:| |||


target  3':UGACGGGUC----GGGGUCGGAGGUAGACC 5'

 -15.90 1 RIC-seq
chrX:139866048:139866085:[+] chr1:113471855:113471890:[-] nonBSJ supported CDS

circRNA 5':UUCCGGAUAAUUUGGGUCUU-CCUGAAAAUCUACGUCUU 3'


            |||:: || |:|: ||: | :|| |:|||


target  3':GAGGUUAAUGGUGA-CGGGUCGGGGUC--GGAGGUAGAC 5'

 -17.20 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:113471855:113471890:[-] target 3899393 chr1:113471857-113471858 C>A Ketoacidosis_due_to_monocarboxylate_transporter-1_deficiency ClinVar
chr1:113471855:113471890:[-] target 2584348 chr1:113471889-113471890 TG>T Ketoacidosis_due_to_monocarboxylate_transporter-1_deficiency ClinVar
chr1:113471866:113471891:[-] target 2584348 chr1:113471889-113471890 TG>T Ketoacidosis_due_to_monocarboxylate_transporter-1_deficiency ClinVar