Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865840:139865907:[+] chr17:48771367:48771418:[-] nonBSJ supported 3UTR

circRNA 5':AGUGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUCUUC-CAGUC-AAUCCACAUCUUCCGGA 3'


            ||: |:|||| |||| |||: ||| |||| :||||


target  3':ACAUU-AGGGUC------GAUGAACCC-----------UCCGACUCCGUCCUCUUAGCAAACUUGGGCCC 5'

 -21.60 14 RIC-seq
chrX:139865840:139865920:[+] chr17:48771367:48771429:[-] nonBSJ supported 3UTR

circRNA 5':AGUGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUCUUC-CAGUC-AAUCCACAUCUUCCGGAAAAAAUCCAGGUC 3'


            ||: |:|||| |||| |||: ||| |||| :|||| ||||


target  3':ACAUU-AGGGUC------GAUGAACCC-----------UCCGACUCCGUCCUCUUAGCAAACUUGGGCCCUCCGUC--UCCAA 5'

 -23.00 8 RIC-seq
chrX:139865845:139865907:[+] chr17:48771371:48771418:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUCUUC-CAGUC-AAUCCACAUCUUCCGGA 3'


            |:|||| |||| |||: ||| |||| :||||


target  3':UAGGGUC------GAUGAACCC-----------UCCGACUCCGUCCUCUUAGCAAACUUGGGCCC 5'

 -20.20 1 RIC-seq
chrX:139866312:139866374:[+] chr17:48773450:48773506:[-] nonBSJ supported CDS

circRNA 5':CCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUU 3'


            ||| ||: ||||| ||:| ||||||| | ||| ||||| |||| |||:


target  3':AGUAGUCUUGGUCA---AGGUCGAGGA---CCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGA 5'

 -37.50 2 RIC-seq
chrX:139866312:139866375:[+] chr17:48773450:48773507:[-] nonBSJ supported CDS

circRNA 5':CCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUUC 3'


            ||| ||: ||||| ||:| ||||||| | ||| ||||| |||| |||:|


target  3':AGUAGUCUUGGUCA---AGGUCGAGGA---CCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGAU 5'

 -37.90 21 RIC-seq
chrX:139866330:139866375:[+] chr17:48773466:48773507:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUUC 3'


            ||| ||:| ||||||| | ||| ||||| |||| |||:|


target  3': GUCGAGGA---CCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGAU 5'

 -30.20 1 RIC-seq
chrX:139866336:139866375:[+] chr17:48773468:48773507:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUUC 3'


            |||| ||||||| | ||| ||||| |||| |||:|


target  3':CGAGGACCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGAU 5'

 -28.50 18 RIC-seq
chrX:139866337:139866375:[+] chr17:48773468:48773507:[-] nonBSJ supported CDS

circRNA 5': UUCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUUC 3'


            |||| ||||||| | ||| ||||| |||| |||:|


target  3':CGAGGACCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGAU 5'

 -28.30 1 RIC-seq
chrX:139866338:139866375:[+] chr17:48773469:48773507:[-] nonBSJ supported CDS

circRNA 5': UCCAGGAAAUCC--GUGUCUUCCAGCAA-AUCCACGUCUUC 3'


            ||| ||||||| | ||| ||||| |||| |||:|


target  3':GAGGACCUUUAGAACCUCAGC---UCGUUGUAGGAACAGGAU 5'

 -28.00 1 RIC-seq
chrX:139866354:139866386:[+] chr17:48773462:48773500:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGC------AAAUCCAC--GUCUUCCAACAAAGCCA 3'


            ||||||| ||||| ||| ||||| ||


target  3':CAAGGUCGAGGACCUUUAGAACCUCAGCUCGUUGUA--GGA 5'

 -18.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:48773450:48773506:[-] target - chr17:48773462-48773463 G>T LICA-CN ICGC
chr17:48773450:48773507:[-] target - chr17:48773462-48773463 G>T LICA-CN ICGC
chrX:139865840:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865840:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865845:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866312:139866374:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866375:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC