Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865669:139865701:[+] chr21:22664509:22664541:[+] nonBSJ supported CDS

circRNA 5':CCAUG----------UCUUCCAGAAAAAUCUGUGUCUUCCACC 3'


            ||:| |||:|| ||| | |:|||||


target  3':AGUGCCUUCAGUUAAAGAGGG--------GAC-C-GGAGGUGA 5'

 -19.80 23 RIC-seq
chrX:139865669:139865701:[+] chr21:22664510:22664541:[+] nonBSJ supported CDS

circRNA 5':CCAUG----------UCUUCCAGAAAAAUCUGUGUCUUCCACC 3'


            ||:| |||:|| ||| | |:|||||


target  3':AGUGCCUUCAGUUAAAGAGGG--------GAC-C-GGAGGUG 5'

 -19.60 1 RIC-seq
chrX:139866468:139866502:[+] chr21:22707957:22707986:[+] nonBSJ supported CDS

circRNA 5':ACAAAGGUAUGUCUUCCAACAAAGGUACGUC-UUCC 3'


            |||||: ||| ||:|: |: |||


target  3':GGUUUCU-----GAACCUCC-UUUCGAACGAAAAGU 5'

 -5.90 38 RIC-seq
chrX:139866470:139866484:[+] chr21:22707957:22707972:[+] nonBSJ supported CDS

circRNA 5':AAAGGUAUGUC-UUCC 3'


            ||:|: ||: |||


target  3':CUUUCGAACGAAAAGU 5'

 -5.30 1 RIC-seq
chrX:139866486:139866493:[+] chr21:22707979:22707986:[+] nonBSJ supported CDS

circRNA 5':ACAAAGGU 3'


            |||||:


target  3':GGUUUCUG 5'

 -5.10 1 RIC-seq
chrX:139866639:139866665:[+] chr21:22664503:22664519:[+] nonBSJ supported CDS

circRNA 5':GGGCUUCCAGCAUCUGCUCGUCUUCCA 3'


            |||:|||| | ||||||


target  3':ACCGGAGGU-G---------AGAAGGA 5'

 -20.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr21:22664509:22664541:[+] target - chr21:22664526-22664527 A>G BTCA-JP ICGC
chr21:22664510:22664541:[+] target - chr21:22664526-22664527 A>G BTCA-JP ICGC