Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866699:139866718:[+] chr4:186507583:186507602:[-] nonBSJ supported 3UTR

circRNA 5':CCAGCAUCUUCAUGUCUUCC 3'


            ||:||| ||| ||||:||


target  3':AGUUGUAUAAGGACAGGAGU 5'

 -18.60 1 RIC-seq
chrX:139866737:139866765:[+] chr4:186507576:186507602:[-] nonBSJ supported 3UTR

circRNA 5':CAUCAACUGGCUCAAUA---UCCAUGUCUUCC 3'


            |||| |||||||:| ||| ||||:||


target  3': UAGU---CCGAGUUGUAUAAGG-ACAGGAGU 5'

 -26.60 18 RIC-seq
chrX:139866746:139866765:[+] chr4:186507582:186507602:[-] nonBSJ supported 3UTR

circRNA 5':GCUCAAUA---UCCAUGUCUUCC 3'


            |||||:| ||| ||||:||


target  3': GAGUUGUAUAAGG-ACAGGAGU 5'

 -18.40 14 RIC-seq