Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866267:139866325:[+] chr2:176043023:176043076:[-] nonBSJ supported CDS

circRNA 5':CCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAA---------AUCCAUAGCUUCCGAA 3'


            ||:|| || ||||| | | || |||| |:|||||||||| ||


target  3':CGUUUGUUUU-------AGUUCUUU------C-GUUGGUAGUUUGUUUUCUCUGGGUAUCGAAGUCUG 5'

 -25.70 2 RIC-seq
chrX:139866267:139866325:[+] chr2:176043024:176043076:[-] nonBSJ supported CDS

circRNA 5':CCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAA---------AUCCAUAGCUUCCGAA 3'


            ||:|| || ||||| | | || |||| |:|||||||||| ||


target  3': GUUUGUUUU-------AGUUCUUU------C-GUUGGUAGUUUGUUUUCUCUGGGUAUCGAAGUCUG 5'

 -25.30 1 RIC-seq
chrX:139866297:139866325:[+] chr2:176043040:176043076:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCCUCAA---------AUCCAUAGCUUCCGAA 3'


            | | || |||| |:|||||||||| ||


target  3':UC-GUUGGUAGUUUGUUUUCUCUGGGUAUCGAAGUCUG 5'

 -22.80 23 RIC-seq
chrX:139866309:139866325:[+] chr2:176043060:176043076:[-] nonBSJ supported CDS

circRNA 5':AAUCCAUAGCUUCCGAA 3'


            |:|||||||||| ||


target  3':CUGGGUAUCGAAGUCUG 5'

 -19.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866267:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866297:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866309:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC