Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866638:139866657:[+] chr4:170191040:170191055:[-] nonBSJ supported 5UTR

circRNA 5':AGGGCUUCCAGCAUCUGCUC 3'


            ||:| ||| || ||||


target  3': UCUGU--GUC-UAAACGAA 5'

 -9.30 1 RIC-seq
chrX:139866316:139866358:[+] chr4:170077755:170077789:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCC 3'


            ||| ||| ||||| |||||| || :||||


target  3':ACGA---CUUAAAU--UCCAG-AGGUCCG--AGAAAAGGAAGU 5'

 -23.80 15 RIC-seq
chrX:139866341:139866397:[+] chr4:170077645:170077695:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUC 3'


            || :||| :|||| ||||||||| ||||||


target  3':GCCAAAUUAU-UAGACG--UGUUUCAACCACCCCUU---UUUCGGUACCUAAGGUAA 5'

 -23.10 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:170077755:170077789:[-] target - chr4:170077789-170077790 A>G LAML-KR ICGC
chrX:139866316:139866358:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC