Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865504:139865539:[+] chr3:100083678:100083714:[-] nonBSJ supported 3UTR

circRNA 5': GCUCCAAGUCUUCCAGUAAA--UCAAGUCUUCCAGCAA 3'


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target  3':ACCAGGUG-AGGGGGUAGUUAUGAG-UCAGAAGGUUGUG 5'

 -33.90 2 RIC-seq
chrX:139865511:139865529:[+] chr3:100092460:100092478:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUAAAUCAAGU 3'


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target  3':AAGAAGUUGAACUAGUUCC 5'

 -10.80 1 RIC-seq