Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866285:139866309:[+]	chr5:14769165:14769201:[-]	nonBSJ supported	CDS	circRNA 5':CCAGAAAAUCCUUGUCU------------UCCCUCAA 3' \|\| \|\|\| \|\| \|:\|: \|\| \|\|\|\| target 3':AGUGUUUGUGGUCCGGGUGUAAAAACUUCAGUGAGUA 5'	-12.90	25	RIC-seq
chrX:139866301:139866322:[+]	chr5:14769193:14769221:[-]	nonBSJ supported	CDS	circRNA 5':UUCCCUCAA---AUCCAU----AGCUUCC 3' \|\| \|\|\|\| \|:\|\| \|:\|\|\|\| target 3':CAGUGAGUACCCUGGGCACUUCUUGAAGU 5'	-9.40	2	RIC-seq
chrX:139866318:139866340:[+]	chr5:14769164:14769184:[-]	nonBSJ supported	CDS	circRNA 5':CUUC-CGAAAAAUCCAGGUCUUCC 3' \|\|\| \|:\|\| \|\|\|\|\|:\|: \| target 3': AAGUGUUUGU--GGUCCGGGUGU 5'	-16.40	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866301:139866322:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC