Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865893:139865953:[+] chr17:55390213:55390268:[+] nonBSJ supported Intron

circRNA 5':UCCACAUC-UUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGA--UCCAC 3'


            |||| | :|||:| || ||: ||| ||||:: :|||| ||||


target  3':UGGUGACGUGAGGUC-------GGACCGUUGUCUCGCUCUGAGACAGGGUUUUUUCUUUAGGU 5'

 -31.00 1 RIC-seq
chrX:139865893:139865957:[+] chr17:55390207:55390268:[+] nonBSJ supported Intron

circRNA 5':UCCACAUC-UUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGA--UCCAC-GUCU 3'


            |||| | :|||:| || ||: ||| ||||:: :|||| |||| |||


target  3':UGGUGACGUGAGGUC-------GGACCGUUGUCUCGCUCUGAGACAGGGUUUUUUCUUUAGGUUACAGC 5'

 -34.00 1 RIC-seq
chrX:139866220:139866249:[+] chr17:55642435:55642465:[+] nonBSJ supported Intron

circRNA 5':AUCCGUGUCUUCCAGCAAGU--CCACGUCUUC 3'


            || ||||||| |||||||| ||| ||||:


target  3':AAGACACAGAA-GUCGUUCAUUGGUACAGAGA 5'

 -32.60 1 RIC-seq
chrX:139866620:139866644:[+] chr17:55399274:55399304:[+] nonBSJ supported Intron

circRNA 5':AGGUCU-----UCCAGCAUCUCCA-GGGCUU 3'


            ||:|| :||||| ||| :||||


target  3':CUCGGACAUUAGGGUCGAUGAGCCCUCCGAC 5'

 -22.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:55390207:55390268:[+] target - chr17:55390216-55390217 A>G LAML-KR ICGC
chr17:55390213:55390268:[+] target - chr17:55390216-55390217 A>G LAML-KR ICGC
chrX:139865893:139865953:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865893:139865957:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC