Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865820:139865851:[+] chr2:228881826:228881855:[-] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCA--GUCAGUCAGUGUCUUCCAG 3'


            || || :|| |: ||||| ||


target  3': GGACCUCGUACCCCUAGACG---ACAGACCGUA 5'

 -7.90 12 RIC-seq
chrX:139865823:139865844:[+] chr2:228881838:228881857:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAGUCAGUGU 3'


            |:||| ||| :||


target  3':CCUAGACGA-CAGACCG-UACC 5'

 -7.30 1 RIC-seq
chrX:139866215:139866251:[+] chr2:228882752:228882781:[-] nonBSJ supported CDS

circRNA 5':AGGAAAU--CCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            ||| |||||||| || |:| ||||||


target  3':ACCUCUGCUGGCACAGA----CGAUUA-----AGAAGGC 5'

 -23.90 11 RIC-seq
chrX:139866215:139866251:[+] chr2:228882754:228882781:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            ||| |||||||| || |:| ||||||


target  3':CUCUGCUGGCACAGA----CGAUUA-----AGAAGGC 5'

 -23.70 16 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:228881826:228881855:[-] target - chr2:228881829-228881830 G>T LICA-CN ICGC
chr2:228881826:228881855:[-] target - chr2:228881839-228881840 G>T PACA-CA ICGC
chr2:228881838:228881857:[-] target - chr2:228881839-228881840 G>T PACA-CA ICGC