Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865686:139865733:[+] chr2:165946148:165946194:[-] nonBSJ supported 3UTR

circRNA 5':AUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUCUUC 3'


            |||| |: |||| :|| ||||||


target  3':GAGAC-CGUUUUGUGGAAACAGACUAGUAAACUCUCUGUCCCAAGAAC 5'

 -15.10 2 RIC-seq
chrX:139865783:139865830:[+] chr2:166043063:166043105:[-] nonBSJ supported 5UTR

circRNA 5':CAGGUCUUCCAGUCAAUCAGUGUCU---UCCAGAAAGAAAUCCAGGUCUUC 3'


            ||:| ||||| |||:::|| ||| ||||: ||||||||::


target  3':AUCUA-----UCAGU--GUCGUGGAAAAAGGCCUUUUCG-AGGUCCAGGGA 5'

 -33.90 2 RIC-seq