Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865635:139865679:[+] chr1:245020097:245020145:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUC-CAUCAAAUA---CAGAUCUUCCAGCUAAU-CCAUGU-CUUCC 3'


            | |||: || || ||| |||||| |||| ||||


target  3': CGAGAGACGUUGUCACACAAGUCAA-AAGGUCAUAGACGGUAAACGAAGA 5'

 -17.80 1 RIC-seq
chrX:139865644:139865681:[+] chr1:245020100:245020137:[-] nonBSJ supported CDS

circRNA 5':AUCAAAUACAGAUCUUCCAGCUAAUCCA-UGUCUUCCAG 3'


            || |||| ||| |||| |:||| |||


target  3':GAGACGUUGUCACACAAGUCAAA-AGGUCAUAGACGGUA 5'

 -17.20 1 RIC-seq
chrX:139865883:139865928:[+] chr1:245021312:245021355:[-] nonBSJ supported CDS

circRNA 5': UUC-CAGUCAAUCCACAUCUUCCGGAAAAAAUCCA--GGUCUUCCAGCC 3'


            ||| ||:|| || ||||| || :|| ||||:|| |:|


target  3':GAAGUGUUAGAAAGAAG-AGAAGUCCG-----GGGAAACCAGGAGAUUGA 5'

 -26.70 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:245020097:245020145:[-] target 1172594 chr1:245020098-245020099 C>CT Intellectual_disability ClinVar
chr1:245020097:245020145:[-] target 1343373 chr1:245020106-245020107 AAC>A Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245020097:245020145:[-] target 977138 chr1:245020108-245020109 CA>C Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245020097:245020145:[-] target 2023576 chr1:245020133-245020134 GC>G Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245020100:245020137:[-] target 1343373 chr1:245020106-245020107 AAC>A Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245020100:245020137:[-] target 977138 chr1:245020108-245020109 CA>C Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245020100:245020137:[-] target 2023576 chr1:245020133-245020134 GC>G Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245021312:245021355:[-] target 961938 chr1:245021314-245021315 T>TCA Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245021312:245021355:[-] target 3392525 chr1:245021340-245021341 CT>C Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245021312:245021355:[-] target 3392526 chr1:245021343-245021344 TG>T Developmental_and_epileptic_encephalopathy,_54 ClinVar
chrX:139865883:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC