Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866270:139866305:[+] chr5:112203467:112203502:[+] nonBSJ supported 3UTR

circRNA 5':GACUAUCCA-UGUCUUCCAGAAAAUCCUUGUCUUCCC 3'


            || |||| ||||: :||||| ||||||


target  3':AUGUCAGGUAACAGGUAAAUUUUUAUAAA-AGAAGGU 5'

 -22.00 4 RIC-seq
chrX:139866270:139866329:[+] chr5:112203460:112203502:[+] nonBSJ supported 3UTR

circRNA 5':GACUAUCCA-UGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAU 3'


            || |||| ||||: :||||| |||||:|||||:


target  3':AUGUCAGGUAACAGGUAAAUUUUUAUAAAA-------------------GAAGGUUUUUUGA 5'

 -23.30 11 RIC-seq
chrX:139866292:139866329:[+] chr5:112203460:112203498:[+] nonBSJ supported 3UTR

circRNA 5':AUCC-UUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAU 3'


            ||| |||||: |||| |||||:|||||:


target  3':CAGGUAACAGGUAAAUUUUUAUAAAA-GAAGGUUUUUUGA 5'

 -22.20 12 RIC-seq
chrX:139866303:139866329:[+] chr5:112203460:112203497:[+] nonBSJ supported 3UTR

circRNA 5':CCCUCAAAUCCAUAG-----------CUUCCGAAAAAU 3'


            || ||||| |||||:|||||:


target  3':AGGUAAC-AGGUAAAUUUUUAUAAAAGAAGGUUUUUUGA 5'

 -16.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866270:139866329:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866292:139866329:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866303:139866329:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC