Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866594:139866611:[+] chr6:144768746:144768762:[+] nonBSJ supported CDS

circRNA 5':ACAAAUCCAUGUCUUCCU 3'


            || ||||||||||||


target  3':AGUAAAGGUACAGAAGG 5'

 -21.80 1 RIC-seq
chrX:139865770:139865836:[+] chr6:144748028:144748076:[+] nonBSJ supported Intron

circRNA 5':CCAGAAAGAAAUCCAGG-UCUUCCAGUCAAUCAGU-GUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCA 3'


            ||| || |: |||||| |||| |||| ||:||: |||


target  3':AGUC--------GGACUAAGAAGG------AGUCUUCAGAUGACCGAUAAGAAC--CCGGAG---CAG 5'

 -24.70 1 RIC-seq
chrX:139865833:139865862:[+] chr6:144748048:144748077:[+] nonBSJ supported Intron

circRNA 5':GUCAGUCAGUGUCUUCC--AGAAAAAUCUACG 3'


            ||||:| | |||||| |||| |||||


target  3':AAGUCGGACUAAGAAGGAGUCUUC--AGAUGA 5'

 -24.20 1 RIC-seq
chrX:139865989:139866019:[+] chr6:145120854:145120906:[+] nonBSJ supported Intron

circRNA 5':UGUCU----UCCA-----------------GUAAC-CUCCCAGUCUUCCAGAA 3'


            |||| ||| |||| ||||||:|||| ||||


target  3':UCAGAAUCAAGGAAAUACACAUUUCAUCUCCAUUAUGAGGGUUAGAAUGUCUC 5'

 -26.60 2 RIC-seq
chrX:139866489:139866501:[+] chr6:144968613:144968624:[+] nonBSJ supported Intron

circRNA 5':AAGGUACGUCUUC 3'


            |:| || |||:


target  3':CUUC-UGAAGAGA 5'

 -4.40 1 RIC-seq
chrX:139866583:139866594:[+] chr6:144672061:144672072:[+] nonBSJ supported Intron

circRNA 5':UACGUCUUCCAA 3'


            ||||||||||


target  3':CUGCAGAAGGUA 5'

 -16.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866583:139866594:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC