Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865417:139865446:[+] chr6:144779958:144779991:[+] nonBSJ supported CDS

circRNA 5':AAGGUCUUCCAGAUAAUCCUGAG-------CUUCCAG 3'


            ||:|||||||:|| |||| ||||||


target  3':AUCUAGAAGGUUUACA---ACUCUAUGUAAGAAGGUA 5'

 -25.40 4 RIC-seq
chrX:139865420:139865446:[+] chr6:144779958:144779987:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAUAAUCCUGAG-------CUUCCAG 3'


            |||||||:|| |||| ||||||


target  3': AGAAGGUUUACA---ACUCUAUGUAAGAAGGUA 5'

 -19.60 1 RIC-seq
chrX:139866423:139866450:[+] chr6:144779958:144779989:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAACAA---AGGUACG-UCUUCCAA 3'


            ||||||||| ||:|||: |||||||


target  3':CUAGAAGGUUUACAACUCUAUGUAAGAAGGUA 5'

 -26.80 5 RIC-seq
chrX:139866424:139866450:[+] chr6:144779958:144779987:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAA---AGGUACG-UCUUCCAA 3'


            |||||||| ||:|||: |||||||


target  3': AGAAGGUUUACAACUCUAUGUAAGAAGGUA 5'

 -25.10 1 RIC-seq
chrX:139866405:139866424:[+] chr6:144878441:144878455:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGCCUACUUGUG 3'


            | ||| :||| ||||


target  3':UCUGAA---UGGA--AACAA 5'

 -6.40 1 RIC-seq
chrX:139866585:139866593:[+] chr6:144878446:144878455:[+] nonBSJ supported Intron

circRNA 5':CGUCUU-CCA 3'


            | ||| ||


target  3':UCUGAAUGGA 5'

 -4.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:144779958:144779987:[+] target - chr6:144779959-144779960 T>A LINC-JP ICGC
chr6:144779958:144779989:[+] target - chr6:144779959-144779960 T>A LINC-JP ICGC
chr6:144779958:144779991:[+] target - chr6:144779959-144779960 T>A LINC-JP ICGC
chrX:139866585:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC